Month: December 2021

Use of hemagglutinin and neuraminidase amplicon-based high-throughput sequencing with variant analysis to detect co-infection and resolve identical consensus sequences of seasonal influenza in a university setting Faleye, T. O. C., Adams, D., Adhikari, S., Sandrolini, H., Halden, R. U., Varsani, A. & Scotch, M., Dec 2021, In: BMC Infectious Diseases. 21, 1, 810. Research output: … Read more

Circoviruses and cycloviruses identified in Weddell seal fecal samples from McMurdo Sound, Antarctica Patterson, Q. M., Kraberger, S., Martin, D. P., Shero, M. R., Beltran, R. S., Kirkham, A. L., Aleamotu’a, M., Ainley, D. G., Kim, S., Burns, J. M. & Varsani, A., Nov 2021, In: Infection, Genetics and Evolution. 95, 105070. Research output: Contribution … Read more

RDP5: A computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets Martin, D. P., Varsani, A., Roumagnac, P., Botha, G., Maslamoney, S., Schwab, T., Kelz, Z., Kumar, V. & Murrell, B., Jan 1 2021, In: Virus Evolution. 7, 1, veaa087. Research output: Contribution to journal › Article › peer-review

Diverse single‐stranded dna viruses identified in chicken buccal swabs Chrzastek, K., Kraberger, S., Schmidlin, K., Fontenele, R. S., Kulkarni, A., Chappell, L., Dufour‐zavala, L., Kapczynski, D. R. & Varsani, A., Dec 2021, In: Microorganisms. 9, 12, 2602. Research output: Contribution to journal › Article › peer-review

2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales Kuhn, J. H., Adkins, S., Agwanda, B. R., Al Kubrusli, R., Alkhovsky, S. V., Amarasinghe, G. K., Avšič-Županc, T., Ayllón, M. A., Bahl, J., Balkema-Buschmann, A., Ballinger, M. J., Basler, C. F., Bavari, S., Beer, M., Bejerman, N., Bennett, A. … Read more

High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants Fontenele, R. S., Kraberger, S., Hadfield, J., Driver, E. M., Bowes, D., Holland, L. R. A., Faleye, T. O. C., Adhikari, S., Kumar, R., Inchausti, R., Holmes, W. K., Deitrick, S., Brown, P., Duty, D., Smith, T., Bhatnagar, A., Yeager, R. A., Holm, R. … Read more

Correction to: 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales (Archives of Virology, (2021), 166, 12, (3513-3566), 10.1007/s00705-021-05143-6) Kuhn, J. H., Adkins, S., Agwanda, B. R., Al Kubrusli, R., Alkhovsky, S. V., Amarasinghe, G. K., Avšič-Županc, T., Ayllón, M. A., Bahl, J., Balkema-Buschmann, A., Ballinger, M. J., Basler, … Read more

Agricultural practices drive biological loads, seasonal patterns and potential pathogens in the aerobiome of a mixed-land-use dryland Finn, D. R., Maldonado, J., de Martini, F., Yu, J., Penton, C. R., Fontenele, R. S., Schmidlin, K., Kraberger, S., Varsani, A., Gile, G. H., Barker, B., Kollath, D. R., Muenich, R. L., Herckes, P., Fraser, M. & … Read more

Complex evolutionary history of felid anelloviruses Kraberger, S., Serieys, L. EK., Richet, C., Fountain-Jones, N. M., Baele, G., Bishop, J. M., Nehring, M., Ivan, J. S., Newkirk, E. S., Squires, J. R., Lund, M. C., Riley, S. PD., Wilmers, C. C., van Helden, P. D., Van Doorslaer, K., Culver, M., VandeWoude, S., Martin, D. P. … Read more

Taxonomic update for mammalian anelloviruses (family Anelloviridae) Varsani, A., Opriessnig, T., Celer, V., Maggi, F., Okamoto, H., Blomström, A. L., Cadar, D., Harrach, B., Biagini, P. & Kraberger, S., Oct 2021, In: Archives of virology. 166, 10, p. 2943-2953 11 p. Research output: Contribution to journal › Article › peer-review