Publications

Detection of human, porcine and canine picornaviruses in municipal sewage sludge using pan-enterovirus amplicon-based long-read Illumina sequencing

Detection of human, porcine and canine picornaviruses in municipal sewage sludge using pan-enterovirus amplicon-based long-read Illumina sequencing Faleye, T. O. C., Driver, E. M., Bowes, D. A., Holm, R. H., Talley, D., Yeager, R., Bhatnagar, A., Smith, T., Varsani, A., Halden, R. U. & Scotch, M., 2022, In: Emerging Microbes and Infections. 11, 1, p. … Read more

Poxvirus infection in house finches (Haemorhous mexicanus): Genome sequence analysis and patterns of infection in wild birds

Poxvirus infection in house finches (Haemorhous mexicanus): Genome sequence analysis and patterns of infection in wild birds McGraw, K. J., Aguiar de Souza Penha, V., Drake, D. J., Kraberger, S. & Varsani, A., 2022, (Accepted/In press) In: Transboundary and Emerging Diseases. Research output: Contribution to journal › Article › peer-review

Microvirus Genomes Identified in Fecal Samples from Yellow-Bellied Marmots

Microvirus Genomes Identified in Fecal Samples from Yellow-Bellied Marmots Tijerino, C. L., Blumstein, D. T., Kraberger, S. & Varsani, A., Feb 2022, In: Microbiology Resource Announcements. 11, 2, e01218-21. Research output: Contribution to journal › Article › peer-review

Identification of a Novel Myxoma Virus C7-Like Host Range Factor That Enabled a Species Leap from Rabbits to Hares

Identification of a Novel Myxoma Virus C7-Like Host Range Factor That Enabled a Species Leap from Rabbits to Hares Águeda-Pinto, A., Kraberger, S., Everts, A., Gutierrez-Jensen, A., Glenn, H. L., Dalton, K. P., Podadera, A., Parra, F., Martinez-Haro, M., Viñuelas, J. A., Varsani, A., McFadden, G., Rahman, M. M. & Esteves, P. J., Apr 2022, … Read more

Circoviruses and cycloviruses identified in Weddell seal fecal samples from McMurdo Sound, Antarctica

Circoviruses and cycloviruses identified in Weddell seal fecal samples from McMurdo Sound, Antarctica Patterson, Q. M., Kraberger, S., Martin, D. P., Shero, M. R., Beltran, R. S., Kirkham, A. L., Aleamotu’a, M., Ainley, D. G., Kim, S., Burns, J. M. & Varsani, A., Nov 2021, In: Infection, Genetics and Evolution. 95, 105070. Research output: Contribution … Read more

RDP5: A computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets

RDP5: A computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets Martin, D. P., Varsani, A., Roumagnac, P., Botha, G., Maslamoney, S., Schwab, T., Kelz, Z., Kumar, V. & Murrell, B., Jan 1 2021, In: Virus Evolution. 7, 1, veaa087. Research output: Contribution to journal › Article › peer-review

Diverse single‐stranded dna viruses identified in chicken buccal swabs

Diverse single‐stranded dna viruses identified in chicken buccal swabs Chrzastek, K., Kraberger, S., Schmidlin, K., Fontenele, R. S., Kulkarni, A., Chappell, L., Dufour‐zavala, L., Kapczynski, D. R. & Varsani, A., Dec 2021, In: Microorganisms. 9, 12, 2602. Research output: Contribution to journal › Article › peer-review

2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales Kuhn, J. H., Adkins, S., Agwanda, B. R., Al Kubrusli, R., Alkhovsky, S. V., Amarasinghe, G. K., Avšič-Županc, T., Ayllón, M. A., Bahl, J., Balkema-Buschmann, A., Ballinger, M. J., Basler, C. F., Bavari, S., Beer, M., Bejerman, N., Bennett, A. … Read more

High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants

High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants Fontenele, R. S., Kraberger, S., Hadfield, J., Driver, E. M., Bowes, D., Holland, L. R. A., Faleye, T. O. C., Adhikari, S., Kumar, R., Inchausti, R., Holmes, W. K., Deitrick, S., Brown, P., Duty, D., Smith, T., Bhatnagar, A., Yeager, R. A., Holm, R. … Read more

Correction to: 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales (Archives of Virology, (2021), 166, 12, (3513-3566), 10.1007/s00705-021-05143-6)

Correction to: 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales (Archives of Virology, (2021), 166, 12, (3513-3566), 10.1007/s00705-021-05143-6) Kuhn, J. H., Adkins, S., Agwanda, B. R., Al Kubrusli, R., Alkhovsky, S. V., Amarasinghe, G. K., Avšič-Županc, T., Ayllón, M. A., Bahl, J., Balkema-Buschmann, A., Ballinger, M. J., Basler, … Read more

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