Publications

Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2

Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2 Fischhoff, I. R., Castellanos, A. A., Rodrigues, J. P. G. L. M., Varsani, A. & Han, B. A., Nov 24 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1963, p. 20211651 1 p.Research output: Contribution to journal › Article › peer-review

Use of hemagglutinin and neuraminidase amplicon-based high-throughput sequencing with variant analysis to detect co-infection and resolve identical consensus sequences of seasonal influenza in a university setting

Use of hemagglutinin and neuraminidase amplicon-based high-throughput sequencing with variant analysis to detect co-infection and resolve identical consensus sequences of seasonal influenza in a university setting Faleye, T. O. C., Adams, D., Adhikari, S., Sandrolini, H., Halden, R. U., Varsani, A. & Scotch, M., Dec 2021, In: BMC Infectious Diseases. 21, 1, 810. Research output: … Read more

Circoviruses and cycloviruses identified in Weddell seal fecal samples from McMurdo Sound, Antarctica

Circoviruses and cycloviruses identified in Weddell seal fecal samples from McMurdo Sound, Antarctica Patterson, Q. M., Kraberger, S., Martin, D. P., Shero, M. R., Beltran, R. S., Kirkham, A. L., Aleamotu’a, M., Ainley, D. G., Kim, S., Burns, J. M. & Varsani, A., Nov 2021, In: Infection, Genetics and Evolution. 95, 105070. Research output: Contribution … Read more

RDP5: A computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets

RDP5: A computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets Martin, D. P., Varsani, A., Roumagnac, P., Botha, G., Maslamoney, S., Schwab, T., Kelz, Z., Kumar, V. & Murrell, B., Jan 1 2021, In: Virus Evolution. 7, 1, veaa087. Research output: Contribution to journal › Article › peer-review

A novel lineage of polyomaviruses identified in bark scorpions

A novel lineage of polyomaviruses identified in bark scorpions Schmidlin, K., Kraberger, S., Cook, C., DeNardo, D. F., Fontenele, R. S., Van Doorslaer, K., Martin, D. P., Buck, C. B. & Varsani, A., Nov 2021, In: Virology. 563, p. 58-63 6 p. Research output: Contribution to journal › Article › peer-review

Genomic skimming and nanopore sequencing uncover cryptic hybridization in one of world’s most threatened primates

Genomic skimming and nanopore sequencing uncover cryptic hybridization in one of world’s most threatened primates Malukiewicz, J., Cartwright, R. A., Dergam, J. A., Igayara, C. S., Nicola, P. A., Pereira, L. M. C., Ruiz-Miranda, C. R., Stone, A. C., Silva, D. L., Silva, F. D. F. R. D., Varsani, A., Walter, L., Wilson, M. A., … Read more

Presence and persistence of putative lytic and temperate bacteriophages in vaginal metagenomes from south african adolescents

Presence and persistence of putative lytic and temperate bacteriophages in vaginal metagenomes from south african adolescents Happel, A. U., Balle, C., Maust, B. S., Konstantinus, I. N., Gill, K., Bekker, L. G., Froissart, R., Passmore, J. A., Karaoz, U., Varsani, A. & Jaspan, H., Dec 2021, In: Viruses. 13, 12, 2341. Research output: Contribution to … Read more

Establishment of five new genera in the family Geminiviridae: Citlodavirus, Maldovirus, Mulcrilevirus, Opunvirus, and Topilevirus

Establishment of five new genera in the family Geminiviridae: Citlodavirus, Maldovirus, Mulcrilevirus, Opunvirus, and Topilevirus Roumagnac, P., Lett, J. M., Fiallo-Olivé, E., Navas-Castillo, J., Zerbini, F. M., Martin, D. P. & Varsani, A., 2021, (Accepted/In press) In: Archives of virology. Research output: Contribution to journal › Article › peer-review

Novel circular DNA virus identified in Opuntia discolor (Cactaceae) that codes for proteins with similarity to those of geminiviruses

Novel circular DNA virus identified in Opuntia discolor (Cactaceae) that codes for proteins with similarity to those of geminiviruses Fontenele, R. S., Köhler, M., Majure, L. C., Avalos-Calleros, J. A., Argüello-Astorga, G. R., Font, F., Vidal, A. H., Roumagnac, P., Kraberger, S., Martin, D. P., Lefeuvre, P. & Varsani, A., 2021, In: Journal of General … Read more

Discovery of novel fish papillomaviruses: From the Antarctic to the commercial fish market

Discovery of novel fish papillomaviruses: From the Antarctic to the commercial fish market Kraberger, S., Austin, C., Farkas, K., Desvignes, T., Postlethwait, J. H., Fontenele, R. S., Schmidlin, K., Bradley, R. W., Warzybok, P., Van Doorslaer, K., Davison, W., Buck, C. B. & Varsani, A., Jan 2 2022, In: Virology. 565, p. 65-72 8 p. … Read more

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